5 Best Payroll Software in the Philippines (2026)

When looking for the best payroll software in the Philippines, pick a solution that can fully automate the calculation and processing of employee salaries, government contributions, taxes, and payslips. 

It must also be compliant with Philippine regulations such as BIR, SSS, PhilHealth, and Pag-IBIG, and seamlessly integrate with HR to sync employee data and provide faster, more accurate payroll runs.

With this in mind, here’s a rundown of the five best payroll software in the Philippines. 

Sprout Payroll offers a comprehensive solution that automates the entire payroll process. It handles everything from work hours to payslips and even government filing, and it’s built with local compliance so that your business stays up to date with all relevant laws and regulations.

Unlike offshore payroll software, Sprout Payroll is locally built, meaning it’s designed specifically for the way businesses operate in the Philippines. This makes it easier for HR teams to stay compliant and run payroll without workarounds or adjustments.

Sprout is also AI-powered and human-led. AI tools like Sprout Info, Concierge, and HR Link are available directly in the platform to assist users, speed up tasks, and improve accuracy. A new feature, Payroll Sidekick, will also launch soon to support AI-powered multi-company payroll processing.

Companies will also appreciate Sprout’s built-in financial wellness tools, which you’ll never find in most other payroll software. With ReadyWage, employees can access a portion of their salary anytime they need it, instead of waiting for payday. ReadyCash offers emergency loans directly through Sprout.

Core Features

• All-in-one HR and payroll software 
• DOLE and BIR-compliant payroll engine tailored for Philippine regulations
• Automated computation for SSS, Pag-IBIG, PhilHealth, and taxes
• Built-in 201 file management
• Direct submission of government forms
• Detailed payroll reports, analytics, and audit trails

Key Highlights About Sprout

• Built specifically for Philippine labor, tax, and compliance requirements
• AI-native platform with human-led support 
• Native integration with other Sprout products, such as Sprout HRIS and Performance+
• Integrates with ReadyWage for early wage access and ReadyCash for employee emergency fund to support employee financial wellness
• Upcoming Payroll Sidekick for AI-powered multi-company processing

GreatDay HR is a human resources information system (HRIS) platform designed to simplify HR processes for businesses across Southeast Asia. It automates various HR processes, including payroll, attendance, leave management, and employee self-service. 

Core Features

• Time and attendance tracking
• Payroll disbursement
• Leave management
• Mobile-first interface for employees and administrators
  

Key Highlights about GreatDay HR

• Comprehensive all-in-one HR solution
• Mobile app for easy employee self-service

JeonSoft is one of the oldest HR and Payroll software providers in the Philippines, offering both on-premise and cloud-based solutions. Known for its stability and long presence in the market, JeonSoft caters mainly to SMEs and large enterprises that prioritize basic payroll and government compliance functionality.

While JeonSoft has strong local familiarity and brand recall, it remains a legacy, manually updated platform often preferred by companies that value control or have limited digital transformation readiness.

Core Features

• Handles basic Philippine payroll and compliance (SSS, PhilHealth, Pag-IBIG, BIR).
• Offers on-premise and cloud-hosted deployment options.
• Provides basic employee records and reporting functions.
• Allows manual configuration for pay rules and attendance.
  

Key Highlights About Salarium

• Established local brand with years of presence in the PH market.
• Customizable setup for company-specific payroll needs.
• Suitable for businesses focused only on core payroll functions.

QuickBooks, known for its accounting software, also offers a payroll module, QuickBooks Online Payroll, designed for small businesses. It’s suitable for those who are already using QuickBooks for managing their bookkeeping tasks. 

Core Features

• Payroll processing and tax calculation
• Integration with QuickBooks Accounting
• Basic payroll reporting
  

Key Highlights About QuickBooks Online Payroll

• Ideal for finance teams already using QuickBooks
• Supported by a globally recognized brand

PayrollHero is a cloud-based time, attendance, and payroll solution featuring advanced time-tracking methods such as facial recognition. This makes it especially useful for businesses with remote teams or employees working in different locations.

Core Features

• GPS and selfie clock-ins
• Attendance data integrated into payroll processing
• Exportable payroll and attendance reports
  

Key Highlights About PayrollHero

• Innovative time-tracking features suitable for mobile teams
• Good fit for businesses with remote or distributed workforces

When choosing the best payroll software in the Philippines, consider the following features:

• Local Compliance and Tax Automation: The software should automate SSS, Pag-IBIG, PhilHealth, and BIR deductions and generate DOLE and BIR-compliant forms to reduce manual errors.
• Integration with Timekeeping and HR Tools: Choose a system that integrates time, attendance, leave, and payroll workflows to create a more efficient process.
• Presence of Local Product Development Team: A local software provider can quickly adjust to changes in government rules and business needs. They understand the unique challenges faced by businesses in the Philippines better than offshore developers.
• Company’s Ability to Innovate: Choose a company that continuously improves its software with new technology. For example, Sprout is introducing a new AI-powered platform, Payroll Sidekick, to make payroll processing more accurate and easier to manage. 
• Financial Wellness Integrations: Consider payroll software that provides added support for employees like access to early wage and emergency funds. 
• Ease of Use and Local Support: A user-friendly interface and access to local support teams can help you resolve issues more quickly.
• Scalability: Select a platform that can accommodate your business as it grows, whether through new locations, departments, or a larger workforce.
• Cloud-Based and Secure: Opt for a system that ensures data protection and remote accessibility, especially if you have hybrid or remote employees.

Sprout Payroll stands out for its sharp focus on local regulations, seamless HR integration, advanced AI-enhanced tools, built-in financial wellness tools, and the company’s strong commitment to helping businesses automate and grow. For organizations that want to streamline operations, maintain compliance, and scale confidently, Sprout Payroll remains the best payroll software in the Philippines for 2026.

You may also explore other business solutions, like Sprout HR for employee records and Performance+ for performance and learning management: all designed to work seamlessly with Sprout Payroll. Visit our website to learn more!